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Source code for eisen.ops.metrics.dice

from torch import nn
from eisen import EPS


[docs]class DiceMetric(nn.Module): """ The Dice coefficient is often used in segmentation tasks to evaluate the performance of algorithms by providing a scalar result expressing the amount of overlap between the ground truth contour and the prediction. The Dice coefficient is robust to class imbalance and therefore suitable to evaluate small foreground regions in images or volumes. This version of the Dice metrics supports multi-class segmentation (although in a naive manner). """
[docs] def __init__(self, weight=1.0, dim=None): """ :param weight: absolute weight of this metric :type weight: float <json> [ {"name": "input_names", "type": "list:string", "value": "['predictions', 'labels']"}, {"name": "output_names", "type": "list:string", "value": "['dice_metric']"}, {"name": "weight", "type": "float", "value": "1.0"}, {"name": "dim", "type": "list:int", "value": "[1, 2, 3, 4]"} ] </json> """ super(DiceMetric, self).__init__() self.sum_kwargs = {} if dim is not None: self.sum_kwargs["dim"] = dim self.weight = weight
[docs] def forward(self, predictions, labels): """ Computes Dice metric between predictions and labels. :param predictions: Predictions by the neural network :type predictions: torch.Tensor :param labels: Ground truth annotation from dataset :type predictions: torch.Tensor :return: Dice metric """ predictions = (predictions >= 0.5).float() dice = 2.0 * ( (labels * predictions).sum(**self.sum_kwargs) / ((labels ** 2 + predictions ** 2).sum(**self.sum_kwargs) + EPS) ) dice_metric = self.weight * dice.mean() return dice_metric

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